Publications: All

The ENCODE (ENCyclopedia Of DNA Elements) Project

ENCODE Project Scientific Management: National Human Genome Research Institute (E. A. Feingold, P. J. Good, M. S. Guyer, S. Kamholz, L. Liefer, K. Wetterstrand, F. S. Collins).Initial ENCODE Pilot Phase Participants: Affymetrix, Inc. (T. R. Gingeras, D. Kampa, E. A. Sekinger, J. Cheng, H. Hirsch, S. Ghosh, Z. Zhu, S. Patel, A. Piccolboni, A. Yang, H. Tammana, S. Bekiranov, P. Kapranov, R. Harrison, G. Church, K. Struhl); Ludwig Institute for Cancer Research (B. Ren, T. H. Kim, L. O. Barrera, C. Qu, S. Van Calcar, R. Luna, C. K. Glass, M. G. Rosenfeld); Municipal Institute of Medical Research (R. Guigo, S. E. Antonarakis, E. Birney, M. Brent, L. Pachter, A. Reymond, E. T. Dermitzakis, C. Dewey, D. Keefe, F. Denoeud, J. Lagarde, J. Ashurst, T. Hubbard, J. J. Wesselink, R. Castelo, E. Eyras); Stanford University (R. M. Myers, A. Sidow, S. Batzoglou, N. D. Trinklein, S. J. Hartman, S. F. Aldred, E. Anton, D. I. Schroeder, S. S. Marticke, L.Nguyen, J.Schmutz, J.Grimwood, M.Dickson, G. M. Cooper, E. A. Stone, G. Asimenos, M. Brudno); University of Virginia (A.Dutta, N.Karnani, C.M.Taylor, H. K. Kim, G. Robins); University of Washington (G. Stamatoyannopoulos, J. A. Stamatoyannopoulos, M. Dorschner, P. Sabo, M. Hawrylycz, R. Humbert, J. Wallace, M. Yu, P. A. Navas, M. McArthur, W. S. Noble); Wellcome Trust Sanger Institute (I. Dunham, C. M. Koch, R.M.Andrews, G.K.Clelland, S.Wilcox, J.C.Fowler, K.D. James, P. Groth, O. M. Dovey, P. D. Ellis, V. L. Wraight, A. J. Mungall, P. Dhami, H. Fiegler, C. F. Langford, N. P. Carter, D. Vetrie); Yale University (M. Snyder, G. Euskirchen, A. E. Urban, U. Nagalakshmi, J. Rinn, G. Popescu, P. Bertone, S.Hartman, J. Rozowsky, O. Emanuelsson, T. Royce, S. Chung, M. Gerstein, Z. Lian, J. Lian, Y. Nakayama, S. Weissman, V.Stolc, W.Tongprasit, H.Sethi). Additional ENCODE Pilot Phase Participants: British Columbia Cancer Agency Genome Sciences Centre (S. Jones, M. Marra, H. Shin, J. Schein); Broad Institute (M. Clamp, K. Lindblad-Toh, J. Chang, D. B. Jaffe, M. Kamal, E. S. Lander, T. S. Mikkelsen, J. Vinson, M. C. Zody); Children's Hospital Oakland Research Institute (P.J.deJong, K.Osoegawa, M.Nefedov, B.Zhu); National Human Genome Research Institute/Computational Genomics Unit (A. D. Baxevanis, T. G. Wolfsberg); National Human Genome Research Institute/Molecular Genetics Section (F. S. Collins, G. E. Crawford, J. Whittle, I. E. Holt, T. J. Vasicek, D. Zhou, S. Luo); NIH Intramural Sequencing Center/National Human Genome Research Institute (E. D. Green, G. G. Bouffard, E. H. Margulies, M. E. Portnoy, N. F. Hansen, P. J. Thomas, J. C. McDowell, B. Maskeri, A. C. Young, J. R. Idol, R. W. Blakesley); National Library of Medicine (G. Schuler); Pennsylvania State University (W. Miller, R. Hardison, L. Elnitski, P. Shah); The Institute for Genomic Research (S. L. Salzberg, M. Pertea, W. H. Majoros); University of California, Santa Cruz (D. Haussler, D. Thomas, K. R. Rosenbloom, H. Clawson, A. Siepel, W. J. Kent). ENCODE Technology Development Phase Participants: Boston University (Z. Weng, S. Jin, A. Halees, H. Burden, U. Karaoz, Y. Fu, Y. Yu, C. Ding, C. R. Cantor); Massachusetts General Hospital (R. E. Kingston, J. Dennis); NimbleGen Systems, Inc.(R.D.Green, M.A.Singer, T.A. Richmond, J.E.Norton, P.JFarnham, M.J.Oberley, D.R. Inman); NimbleGen Systems, Inc. (M. R. McCormick, H. Kim, C. L. Middle, M. C. Pirrung); University of California, San Diego (X. D. Fu, Y. S. Kwon, Z. Ye); University of Massachusetts Medical School (J. Dekker, T. M. Tabuchi, N. Gheldof, J. Dostie, S. C. Harvey).

Science 22 October 2004: Vol. 306 no. 5696 pp. 636-640